Filterffpe github
WebAfter applying FilterFFPE, the mean positive predictive value improved from 0.27 to 0.48 in simulated samples and from 0.11 to 0.27 in real samples, while sensitivity remained basically unchanged ... WebContact GitHub support about this user’s behavior. Learn more about reporting abuse. Report abuse. Overview Repositories 39 Projects 0 Packages 1 Stars 100. Pinned …
Filterffpe github
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Web/bioconductor-filterffpe/meta.yaml This package finds and filters artificial chimeric reads specifically generated in next-generation sequencing (NGS) process of formalin-fixed … WebOverview. View source. Edit this page. " Bioconductor Packages: Development, Maintenance, and Peer Review " was written by Kevin Rue-Albrecht, Daniela Cassol, Johannes Rainer, Lori Shepherd. It was last built on 2024-03-08. This book was built by the bookdown R package.
WebUpdated Filters for FFmpeg. Contribute to indiefan/FFmpeg-Filters development by creating an account on GitHub. WebSep 22, 2024 · FilterFFPE is a filtration algorithm, removing artifact chimeric reads from sequencing data while keeping real chimeric reads. To evaluate the performance of …
Webquality, or to only keep reads in targeted region, please do that after using FilterFFPE, as these steps may remove some of the alignments that is useful to the FilterFFPE’s … WebDOI: 10.18129/B9.bioc.BiocStyle Standard styles for vignettes and other Bioconductor documents. Bioconductor version: Release (3.16) Provides standard formatting styles for Bioconductor PDF and HTML documents.
WebSep 22, 2024 · After applying FilterFFPE, the mean positive predictive value improved from 0.27 to 0.48 in simulated samples and from 0.11 to 0.27 in real samples, while sensitivity remained basically unchanged ...
Web4.1.2 biocViews during new package development. Visit the ‘devel’ biocViews when you are in the process of adding biocViews to your new package. Identify as many terms as appropriate from the hierarchy. Prefer ‘leaf’ terms at the end of the hierarchy, over more inclusive terms. mib browser redditWebNov 8, 2024 · FilterFFPE, findArtifactChimericReads, FFPEReadFilter. ... GitHub issue tracker [email protected] Personal blog Improve this page. Embedding an R snippet on your website Add the following code to your website. Copy to clipboard. For more information on customizing the ... mib branchesWeb3.2.9 Undesirable files. The raw package directory should not contain unnecessary files, system files, or hidden files such as .DS_Store, .project, .git, cache files, log files, *.Rproj, *.so, etc.These files may be present in your local directory but should not be commited to git (see .gitignore).Any files or directories for other applications (Github Actions, devtool, … mib browser tree onlineWebNov 8, 2024 · This package finds and filters artificial chimeric reads specifically generated in next-generation sequencing (NGS) process of formalin-fixed paraffin-embedded (FFPE) … how to catch a husband cheatingWebNov 8, 2024 · The FilterFFPE package contains the following man pages: FFPEReadFilter filterBamByReadNames FilterFFPE-package findArtifactChimericReads ... CRAN … how to catch a lake troutWebThe ability to efficiently represent and manipulate genomic annotations and alignments is playing a central role when it comes to analyzing high-throughput sequencing data (a.k.a. NGS data). The GenomicRanges package defines general purpose containers for storing and manipulating genomic intervals and variables defined along a genome. More … mib browser full formWebNov 6, 2024 · Within the past 4 years, you have held joint grants, published or collaborated with any of the authors of the selected paper. You have a close personal relationship (e.g. parent, spouse, sibling, or domestic partner) with any of the authors. mib brother